Paketti: python3-bcbio (1.2.9-4) [multiverse]

Links for python3-bcbio

Imuroi lähdekoodipaketti bcbio:

Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly.

It should generally not be necessary for users to contact the original maintainer.

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-cyvcf2

VCF parser based on htslib (Python 3)
dep: python3-joblib

tools to provide lightweight pipelining in Python
dep: python3-logbook

logging system for Python that replaces the standard library's module (Python 3)
dep: python3-matplotlib

Python based plotting system in a style similar to Matlab
dep: python3-psutil

module providing convenience functions for managing processes (Python3)
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-requests

elegant and simple HTTP library for Python3, built for human beings
dep: python3-scipy

scientific tools for Python 3
dep: python3-six

Python 2 and 3 compatibility library
dep: python3-tornado

scalable, non-blocking web server and tools - Python 3 package

rec: cnvkit

Copy number variant detection from targeted DNA sequencing
rec: gsort

sort genomic data
rec: libfreetype6

FreeType 2 font engine, shared library files
rec: libhts-dev

development files for the HTSlib
rec: lumpy-sv

general probabilistic framework for structural variant discovery
rec: mosdepth

BAM/CRAM depth calculation biological sequencing
rec: multiqc

output integration for RNA sequencing across tools and samples
rec: python3-arrow

Python3 library to manipulate dates, times, and timestamps
rec: python3-geneimpacts

wraps command line tools to assess variants in gene sequences
rec: python3-h5py

general-purpose Python interface to hdf5
rec: python3-statsmodels

Python3 module for the estimation of statistical models
rec: python3-tabulate

pretty-print tabular data in Python3
rec: r-bioc-purecn

copy number calling and SNV classification using targeted short read sequencing
rec: r-bioc-titancna

Subclonal copy number and LOH prediction from whole genome sequencing
rec: r-other-wasabi

prepare Sailfish and Salmon output for downstream analysis using GNU R
rec: seqan-apps

C++ library for the analysis of biological sequences
rec: snpeff

genetic variant annotation and effect prediction toolbox - tool
rec: vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files
rec: vt

toolset for short variant discovery in genetic sequence data

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