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| 1 | +#!/usr/bin/env python3 |
| 2 | +import json |
| 3 | +from fuzzywuzzy import fuzz, process |
| 4 | +import shutil |
| 5 | +import os |
| 6 | +import subprocess as sp |
| 7 | + |
| 8 | +if os.path.exists('line-contributions.txt'): |
| 9 | + with open('line-contributions.txt', 'rt') as fp: |
| 10 | + lines = fp.readlines() |
| 11 | +else: |
| 12 | + if shutil.which('git-line-summary'): |
| 13 | + print("Running git-line-summary on nipype repo") |
| 14 | + lines = sp.check_output(['git-line-summary']).decode().split('\n') |
| 15 | + else: |
| 16 | + raise RuntimeError("Install Git Extras to view git contributors") |
| 17 | + |
| 18 | +data = [' '.join(line.strip().split()[1:-1]) for line in lines if '%' in line] |
| 19 | + |
| 20 | +# load zenodo from master |
| 21 | +with open('.zenodo.json', 'rt') as fp: |
| 22 | + zenodo = json.load(fp) |
| 23 | +zen_names = [' '.join(val['name'].split(',')[::-1]).strip() |
| 24 | + for val in zenodo['creators']] |
| 25 | + |
| 26 | +name_matches = [] |
| 27 | + |
| 28 | +for ele in data: |
| 29 | + matches = process.extract(ele, zen_names, scorer=fuzz.token_sort_ratio, |
| 30 | + limit=2) |
| 31 | + # matches is a list [('First match', % Match), ('Second match', % Match)] |
| 32 | + if matches[0][1] > 80: |
| 33 | + val = zenodo['creators'][zen_names.index(matches[0][0])] |
| 34 | + else: |
| 35 | + # skip unmatched names |
| 36 | + print("No entry to sort:", ele) |
| 37 | + continue |
| 38 | + |
| 39 | + if val not in name_matches: |
| 40 | + name_matches.append(val) |
| 41 | + |
| 42 | +# for entries not found in line-contributions |
| 43 | +missing_entries = [ |
| 44 | + {"name": "Varada, Jan"}, |
| 45 | + {"name": "Schwabacher, Isaac"}, |
| 46 | + {"affiliation": "Child Mind Institute / Nathan Kline Institute", |
| 47 | + "name": "Pellman, John", |
| 48 | + "orcid": "0000-0001-6810-4461"}, |
| 49 | + {"name": "Perez-Guevara, Martin"}, |
| 50 | + {"name": "Khanuja, Ranjeet"}, |
| 51 | + {"affiliation": |
| 52 | + "Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.", |
| 53 | + "name": "Pannetier, Nicolas", |
| 54 | + "orcid": "0000-0002-0744-5155"}, |
| 55 | + {"name": "McDermottroe, Conor"}, |
| 56 | +] |
| 57 | + |
| 58 | +for entry in missing_entries: |
| 59 | + name_matches.append(entry) |
| 60 | + |
| 61 | + |
| 62 | +def fix_position(creators): |
| 63 | + # position first / last authors |
| 64 | + f_authr = None |
| 65 | + l_authr = None |
| 66 | + |
| 67 | + for i, info in enumerate(creators): |
| 68 | + if info['name'] == 'Gorgolewski, Krzysztof J.': |
| 69 | + f_authr = i |
| 70 | + if info['name'] == 'Ghosh, Satrajit': |
| 71 | + l_authr = i |
| 72 | + |
| 73 | + if f_authr is None or l_authr is None: |
| 74 | + raise AttributeError('Missing important people') |
| 75 | + |
| 76 | + creators.insert(0, creators.pop(f_authr)) |
| 77 | + creators.insert(len(creators), creators.pop(l_authr + 1)) |
| 78 | + return creators |
| 79 | + |
| 80 | + |
| 81 | +zenodo['creators'] = fix_position(name_matches) |
| 82 | + |
| 83 | +with open('.zenodo.json', 'wt') as fp: |
| 84 | + json.dump(zenodo, fp, indent=2, sort_keys=True) |
| 85 | + fp.write('\n') |
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