Commit ced00b1

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Merge pull request #5 from bendhouseart/update_petsurfer

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2 parents 15eb049 + 0df01a7 commit ced00b1Copy full SHA for ced00b1

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Lines changed: 1 addition & 1 deletion

Original file line number	Diff line number	Diff line change
`@@ -421,7 +421,7 @@ class GLMFitInputSpec(FSTraitedSpec):`
`421`	`421`	`desc="RefTac TimeSec tstar : perform Logan kinetic modeling",`
`422`	`422`	`)`
`423`	`423`	`bp_clip_neg = traits.Bool(`
`424`		`- argstr="--bp-clip-neg",`
	`424`	`+ argstr="--bp-clip-neg",`
`425`	`425`	`desc="set negative BP voxels to zero",`
`426`	`426`	`)`
`427`	`427`	`bp_clip_max = traits.Float(`

Lines changed: 8 additions & 3 deletions

Original file line number	Diff line number	Diff line change
`@@ -460,7 +460,7 @@ class GTMPVCOutputSpec(TraitedSpec):`
`460`	`460`	`)`
`461`	`461`	`eres = File(`
`462`	`462`	`desc="4D PET file of residual error after PVC (smoothed with PSF)",`
`463`		`- )`
	`463`	`+ )`
`464`	`464`	`tissue_fraction = File(`
`465`	`465`	`desc="4D PET file of tissue fraction before PVC",`
`466`	`466`	`)`
`@@ -474,6 +474,7 @@ class GTMPVCOutputSpec(TraitedSpec):`
`474`	`474`	`desc="Color table file for segmentation file",`
`475`	`475`	`)`
`476`	`476`
	`477`	`+`
`477`	`478`	`class GTMPVC(FSCommand):`
`478`	`479`	`"""Perform Partial Volume Correction (PVC) to PET Data.`
`479`	`480`
`@@ -551,8 +552,12 @@ def _list_outputs(self):`
`551`	`552`	`outputs["reg_pet2anat"] = os.path.join(pvcdir, "aux", "bbpet2anat.lta")`
`552`	`553`	`outputs["reg_anat2pet"] = os.path.join(pvcdir, "aux", "anat2bbpet.lta")`
`553`	`554`	`outputs["eres"] = os.path.join(pvcdir, "eres.nii.gz")`
`554`		`- outputs["tissue_fraction"] = os.path.join(pvcdir, "aux", "tissue.fraction.nii.gz")`
`555`		`- outputs["tissue_fraction_psf"] = os.path.join(pvcdir, "aux", "tissue.fraction.psf.nii.gz")`
	`555`	`+ outputs["tissue_fraction"] = os.path.join(`
	`556`	`+ pvcdir, "aux", "tissue.fraction.nii.gz"`
	`557`	`+ )`
	`558`	`+ outputs["tissue_fraction_psf"] = os.path.join(`
	`559`	`+ pvcdir, "aux", "tissue.fraction.psf.nii.gz"`
	`560`	`+ )`
`556`	`561`	`outputs["seg"] = os.path.join(pvcdir, "aux", "seg.nii.gz")`
`557`	`562`	`outputs["seg_ctab"] = os.path.join(pvcdir, "aux", "seg.ctab")`
`558`	`563`

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