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Commit ce24f3e

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force 1 thread is eddy run on gpu
1 parent 2f9aa4b commit ce24f3e

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‎nipype/interfaces/fsl/epi.py

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@@ -960,6 +960,8 @@ def __init__(self, **inputs):
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self._use_cuda()
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def _num_threads_update(self):
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if self.inputs.use_cuda and gpu_count()>0:
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self.inputs.num_threads = 1
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self._num_threads = self.inputs.num_threads
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if not isdefined(self.inputs.num_threads):
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if "OMP_NUM_THREADS" in self.inputs.environ:
@@ -969,6 +971,7 @@ def _num_threads_update(self):
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def _use_cuda(self):
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if self.inputs.use_cuda and gpu_count()>0:
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self.inputs.num_threads = 1
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# eddy_cuda usually link to eddy_cudaX.X but some versions miss the symlink
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# anyway in newer fsl versions eddy automatically use cuda on cuda-capable systems
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self._cmd = "eddy_cuda" if which("eddy_cuda") else "eddy"

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