Commit 0953e5b

author

Zach Lindsey

committed

convert out_files for AFNI 3dZeropad to absolute paths in list_outputs

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+15

-2

lines changed

+15

-2

lines changed

Lines changed: 14 additions & 0 deletions

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`from pathlib import Path`
	`2`	`+from nipype import Node`
`2`	`3`	`from nipype.interfaces.afni import Zeropad`
`3`	`4`	`from nipype.testing.fixtures import create_files_in_directory`
`4`	`5`
`@@ -23,3 +24,16 @@ def test_zeropad_handles_outfile_specified_nii_gz(create_files_in_directory):`
`23`	`24`
`24`	`25`	`assert (Path(outdir) / "padded.nii.gz").exists()`
`25`	`26`	`assert Path(result.outputs.out_file).name == "padded.nii.gz"`
	`27`	`+`
	`28`	`+`
	`29`	`+def test_zeropad_keeps_file_after_node_run(create_files_in_directory):`
	`30`	`+ filelist, outdir = create_files_in_directory`
	`31`	`+`
	`32`	`+ zp = Node(`
	`33`	`+ Zeropad(I=1, out_file="padded.nii.gz"), name="test_zeropad", base_dir=outdir`
	`34`	`+ )`
	`35`	`+ zp.inputs.in_files = Path(outdir) / filelist[0]`
	`36`	`+`
	`37`	`+ result = zp.run()`
	`38`	`+ assert (Path(zp.output_dir()) / "padded.nii.gz").exists()`
	`39`	`+ assert Path(result.outputs.out_file).name == "padded.nii.gz"`

Lines changed: 1 addition & 2 deletions

Original file line number	Diff line number	Diff line change
`@@ -3502,5 +3502,4 @@ def _list_outputs(self):`
`3502`	`3502`
`3503`	`3503`	`if not isdefined(out_file):`
`3504`	`3504`	`out_file = "zeropad+tlrc.BRIK"`
`3505`		`-`
`3506`		`- return {"out_file": out_file}`
	`3505`	`+ return {"out_file": op.abspath(out_file)}`

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