Commit 021e5de

committed

RF: Extract nifti header update from to_filename

1 parent 1f6a608 commit 021e5deCopy full SHA for 021e5de

File tree

1 file changed

-7

lines changed

nibabel/cifti2
- cifti2.py

1 file changed

-7

lines changed

`‎nibabel/cifti2/cifti2.py‎`

Lines changed: 6 additions & 7 deletions

Original file line number	Diff line number	Diff line change
`@@ -1545,7 +1545,11 @@ def update_headers(self):`
`1545`	`1545`	`>>> img.shape == (2, 3, 4)`
`1546`	`1546`	`True`
`1547`	`1547`	`"""`
`1548`		`- self._nifti_header.set_data_shape((1, 1, 1, 1) + self._dataobj.shape)`
	`1548`	`+ header = self._nifti_header`
	`1549`	`+ header.set_data_shape((1, 1, 1, 1) + self._dataobj.shape)`
	`1550`	`+ # if intent code is not set, default to unknown`
	`1551`	`+ if header.get_intent()[0] == 'none':`
	`1552`	`+ header.set_intent('NIFTI_INTENT_CONNECTIVITY_UNKNOWN')`
`1549`	`1553`
`1550`	`1554`	`def get_data_dtype(self):`
`1551`	`1555`	`return self._nifti_header.get_data_dtype()`
`@@ -1565,8 +1569,6 @@ def to_filename(self, filename, validate=True):`
`1565`	`1569`	`for the expected IndicesMaps attributes.`
`1566`	`1570`	`If validation fails, an error will be raised instead.`
`1567`	`1571`	`"""`
`1568`		`- nheader = self._nifti_header`
`1569`		`- # try to infer intent code based on filename suffix`
`1570`	`1572`	`if validate:`
`1571`	`1573`	`ext = _extract_cifti_extension(filename)`
`1572`	`1574`	`try:`
`@@ -1576,7 +1578,7 @@ def to_filename(self, filename, validate=True):`
`1576`	`1578`	`f"Validation failed: No information for extension {ext} available"`
`1577`	`1579`	`) from err`
`1578`	`1580`	`intent = CIFTI_CODES.niistring[ext]`
`1579`		`- nheader.set_intent(intent)`
	`1581`	`+ self._nifti_header.set_intent(intent)`
`1580`	`1582`	`# validate matrix indices`
`1581`	`1583`	`for idx, mtype in enumerate(CIFTI_CODES.map_types[ext]):`
`1582`	`1584`	`try:`
`@@ -1586,9 +1588,6 @@ def to_filename(self, filename, validate=True):`
`1586`	`1588`	`f"Validation failed: Cifti2Matrix index map {idx} does "`
`1587`	`1589`	`f"not match expected type {mtype}"`
`1588`	`1590`	`)`
`1589`		`- # if intent code is not set, default to unknown`
`1590`		`- if nheader.get_intent()[0] == 'none':`
`1591`		`- nheader.set_intent('NIFTI_INTENT_CONNECTIVITY_UNKNOWN')`
`1592`	`1591`	`super().to_filename(filename)`
`1593`	`1592`
`1594`	`1593`

0 commit comments

Comments

(0)

Navigation Menu

Search code, repositories, users, issues, pull requests...

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Uh oh!

Commit 021e5de

File tree

1 file changed

1 file changed

`‎nibabel/cifti2/cifti2.py‎`

0 commit comments