Commit d28725f

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fix(pipeline): separated all pipelines

1 parent 3fc3d3b commit d28725fCopy full SHA for d28725f

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+21

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+21

-1

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Lines changed: 1 addition & 1 deletion

Original file line number	Diff line number	Diff line change
`@@ -21,7 +21,7 @@ result <- extract_lfc_multiple(gene_list, csv_files, column_names)`
`21`	`21`
`22`	`22`	`# Save the result to a CSV file with a timestamp`
`23`	`23`	`timestamp <- format(Sys.time(), "%Y.%m.%d_%H.%M.%S")`
`24`		`-file_name <- paste0("files/Heatmap_data.csv")`
	`24`	`+file_name <- paste0("files/heatmap_data.csv")`
`25`	`25`	`write.csv(result, file = file_name, row.names = FALSE)`
`26`	`26`
`27`	`27`	`cat("Data extraction complete. Saved to", file_name, "\n")`

Lines changed: 20 additions & 0 deletions

Original file line number	Diff line number	Diff line change
`@@ -23,6 +23,26 @@`
`23`	`23`	`R_CODE_DIRECTORY = os.path.join(os.path.dirname(__file__), '../code')`
`24`	`24`
`25`	`25`
	`26`	`+@router.post('/preinit')`
	`27`	`+async def preinit(user_info: dict = Depends(verify_token)):`
	`28`	`+`
	`29`	`+ try:`
	`30`	`+`
	`31`	`+ os.makedirs(os.path.join(R_CODE_DIRECTORY, str(user_info['user_id'])), exist_ok=True)`
	`32`	`+ os.makedirs(os.path.join(R_CODE_DIRECTORY, str(user_info['user_id']), "rds"), exist_ok=True)`
	`33`	`+ os.makedirs(os.path.join(R_CODE_DIRECTORY, str(user_info['user_id']), "files"), exist_ok=True)`
	`34`	`+ os.makedirs(os.path.join(R_CODE_DIRECTORY, str(user_info['user_id']), "figures"), exist_ok=True)`
	`35`	`+`
	`36`	`+ FILE_DIR = os.path.join(R_CODE_DIRECTORY, f"{user_info['user_id']}", "files")`
	`37`	`+ robjects.r['setwd'](R_CODE_DIRECTORY + f"/{user_info['user_id']}")`
	`38`	`+`
	`39`	`+`
	`40`	`+ return {"message": "Process initialized"}`
	`41`	`+`
	`42`	`+ except Exception as e:`
	`43`	`+ return {"message": "Error in preinit", "error": str(e)}`
	`44`	`+`
	`45`	`+`
`26`	`46`
`27`	`47`	`@router.post('/init')`
`28`	`48`	`async def init(count_data: UploadFile = File(...), meta_data: UploadFile = File(...), user_info: dict = Depends(verify_token)):`

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