Hi! First of all, thanks for building CodeGraph. I'm testing v0.9.9 with Claude Code on macOS and noticed a small documentation issue.

Environment

• CodeGraph version: 0.9.9
• Installation method:

npx @colbymchenry/codegraph

What happened

The interactive installer already initialized my project automatically.

During installation, I saw:

• Created .codegraph/ directory
• Scanned files
• Parsed code
• Indexed 1,066 files (15,814 symbols)

So the project was already initialized.

Later, I followed the docs and ran:

codegraph init -i

which returned:

Already initialized in /Users/magentaqin/github/firecrawl
Use "codegraph index" to re-index or "codegraph sync" to update

Documentation confusion

The installation docs currently suggest:

1. Run

npx @colbymchenry/codegraph

2. Restart your agent

3. Initialize projects

codegraph init -i

This makes it look like codegraph init -i is always required.

However, with the interactive installer in v0.9.9, initialization already happens automatically, so the extra step isn't necessary.

Suggestion

Maybe clarify that:

• npx @colbymchenry/codegraph already initializes the current project.
• codegraph init -i is only needed when initializing a project manually or when using another installation path.

Thanks!