@assaron

Hi,

I'm running the example code
java -jar rdt-2.5.0-SNAPSHOT-jar-with-dependencies.jar -Q SMI -q "CC(O)CC(=O)OC(C)CC(O)=O.O[H]>>[H]OC(=O)CC(C)O.CC(O)CC(O)=O" -g -c -j AAM -f TEXT and the result looks alright, but unexpectedly it returns non-zero exit code.

I see a line with System.exit(1) here:

Shouldn't it be moved to the end of the catch statement? I believe it should be more appropriate that way

Best,
Alexey