I have arduino due with buzzer connect to pin 53. The buzzer is always on when uploading the sketch (which takes about 45 seconds). It's a very loud and high pitched voice to listen over and over again when testing and uploading constantly. The due is part of a bigger project connected to "motherboard" which among others connects the buzzer to the due pin. Is my only option to change schematics and add a jumper or switch to turn the buzzer off when it's not needed? Can't the uploader control the pins before/during upload to be down?

I'm using the AVRISP mkII programmer and Due programming port from Ubuntu 18.04.4 LTS.