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"""Simple multithreaded algorithm to show how the 4 phases of a genetic algorithm works(Evaluation, Selection, Crossover and Mutation)https://en.wikipedia.org/wiki/Genetic_algorithmAuthor: D4rkia"""from __future__ import annotationsimport random# Maximum size of the population. Bigger could be faster but is more memory expensive.N_POPULATION = 200# Number of elements selected in every generation of evolution. The selection takes# place from best to worst of that generation and must be smaller than N_POPULATION.N_SELECTED = 50# Probability that an element of a generation can mutate, changing one of its genes.# This will guarantee that all genes will be used during evolution.MUTATION_PROBABILITY = 0.4# Just a seed to improve randomness required by the algorithm.random.seed(random.randint(0, 1000))def evaluate(item: str, main_target: str) -> tuple[str, float]:"""Evaluate how similar the item is with the target by justcounting each char in the right position>>> evaluate("Helxo Worlx", "Hello World")('Helxo Worlx', 9.0)"""score = len([g for position, g in enumerate(item) if g == main_target[position]])return (item, float(score))def crossover(parent_1: str, parent_2: str) -> tuple[str, str]:"""Slice and combine two strings at a random point.>>> random.seed(42)>>> crossover("123456", "abcdef")('12345f', 'abcde6')"""random_slice = random.randint(0, len(parent_1) - 1)child_1 = parent_1[:random_slice] + parent_2[random_slice:]child_2 = parent_2[:random_slice] + parent_1[random_slice:]return (child_1, child_2)def mutate(child: str, genes: list[str]) -> str:"""Mutate a random gene of a child with another one from the list.>>> random.seed(123)>>> mutate("123456", list("ABCDEF"))'12345A'"""child_list = list(child)if random.uniform(0, 1) < MUTATION_PROBABILITY:child_list[random.randint(0, len(child)) - 1] = random.choice(genes)return "".join(child_list)# Select, crossover and mutate a new population.def select(parent_1: tuple[str, float],population_score: list[tuple[str, float]],genes: list[str],) -> list[str]:"""Select the second parent and generate new population>>> random.seed(42)>>> parent_1 = ("123456", 8.0)>>> population_score = [("abcdef", 4.0), ("ghijkl", 5.0), ("mnopqr", 7.0)]>>> genes = list("ABCDEF")>>> child_n = int(min(parent_1[1] + 1, 10))>>> population = []>>> for _ in range(child_n):... parent_2 = population_score[random.randrange(len(population_score))][0]... child_1, child_2 = crossover(parent_1[0], parent_2)... population.extend((mutate(child_1, genes), mutate(child_2, genes)))>>> len(population) == (int(parent_1[1]) + 1) * 2True"""pop = []# Generate more children proportionally to the fitness score.child_n = int(parent_1[1] * 100) + 1child_n = 10 if child_n >= 10 else child_nfor _ in range(child_n):parent_2 = population_score[random.randint(0, N_SELECTED)][0]child_1, child_2 = crossover(parent_1[0], parent_2)# Append new string to the population list.pop.append(mutate(child_1, genes))pop.append(mutate(child_2, genes))return popdef basic(target: str, genes: list[str], debug: bool = True) -> tuple[int, int, str]:"""Verify that the target contains no genes besides the ones inside genes variable.>>> from string import ascii_lowercase>>> basic("doctest", ascii_lowercase, debug=False)[2]'doctest'>>> genes = list(ascii_lowercase)>>> genes.remove("e")>>> basic("test", genes)Traceback (most recent call last):...ValueError: ['e'] is not in genes list, evolution cannot converge>>> genes.remove("s")>>> basic("test", genes)Traceback (most recent call last):...ValueError: ['e', 's'] is not in genes list, evolution cannot converge>>> genes.remove("t")>>> basic("test", genes)Traceback (most recent call last):...ValueError: ['e', 's', 't'] is not in genes list, evolution cannot converge"""# Verify if N_POPULATION is bigger than N_SELECTEDif N_POPULATION < N_SELECTED:msg = f"{N_POPULATION} must be bigger than {N_SELECTED}"raise ValueError(msg)# Verify that the target contains no genes besides the ones inside genes variable.not_in_genes_list = sorted({c for c in target if c not in genes})if not_in_genes_list:msg = f"{not_in_genes_list} is not in genes list, evolution cannot converge"raise ValueError(msg)# Generate random starting population.population = []for _ in range(N_POPULATION):population.append("".join([random.choice(genes) for i in range(len(target))]))# Just some logs to know what the algorithms is doing.generation, total_population = 0, 0# This loop will end when we find a perfect match for our target.while True:generation += 1total_population += len(population)# Random population created. Now it's time to evaluate.# (Option 1) Adding a bit of concurrency can make everything faster,## import concurrent.futures# population_score: list[tuple[str, float]] = []# with concurrent.futures.ThreadPoolExecutor(# max_workers=NUM_WORKERS) as executor:# futures = {executor.submit(evaluate, item, target) for item in population}# concurrent.futures.wait(futures)# population_score = [item.result() for item in futures]## but with a simple algorithm like this, it will probably be slower.# (Option 2) We just need to call evaluate for every item inside the population.population_score = [evaluate(item, target) for item in population]# Check if there is a matching evolution.population_score = sorted(population_score, key=lambda x: x[1], reverse=True)if population_score[0][0] == target:return (generation, total_population, population_score[0][0])# Print the best result every 10 generation.# Just to know that the algorithm is working.if debug and generation % 10 == 0:print(f"\nGeneration: {generation}"f"\nTotal Population:{total_population}"f"\nBest score: {population_score[0][1]}"f"\nBest string: {population_score[0][0]}")# Flush the old population, keeping some of the best evolutions.# Keeping this avoid regression of evolution.population_best = population[: int(N_POPULATION / 3)]population.clear()population.extend(population_best)# Normalize population score to be between 0 and 1.population_score = [(item, score / len(target)) for item, score in population_score]# This is selectionfor i in range(N_SELECTED):population.extend(select(population_score[int(i)], population_score, genes))# Check if the population has already reached the maximum value and if so,# break the cycle. If this check is disabled, the algorithm will take# forever to compute large strings, but will also calculate small strings in# a far fewer generations.if len(population) > N_POPULATION:breakif __name__ == "__main__":target_str = ("This is a genetic algorithm to evaluate, combine, evolve, and mutate a string!")genes_list = list(" ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklm""nopqrstuvwxyz.,;!?+-*#@^'èéòà€ù=)(&%$£/\\")generation, population, target = basic(target_str, genes_list)print(f"\nGeneration: {generation}\nTotal Population: {population}\nTarget: {target}")
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