The First Software for Quantitative Trajectory Inference [R package treefit version 1.0.3]

treefit: The First Software for Quantitative Trajectory Inference

Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.

Version: 1.0.3

Imports: ggplot2, igraph, patchwork, pracma

Suggests: Seurat, gridExtra, knitr, plotly, qpdf, rmarkdown, testthat

Published: 2025年02月09日

DOI: 10.32614/CRAN.package.treefit

Author: Momoko Hayamizu ORCID iD [aut], Kouhei Sutou ORCID iD [aut, cre], Ryohei Suzuki ORCID iD [aut], Hiromi Ishii ORCID iD [aut]

Maintainer: Kouhei Sutou <kou at clear-code.com>

BugReports: https://github.com/hayamizu-lab/treefit-r/issues

License: GPL (≥ 3)

URL: https://hayamizu-lab.github.io/treefit-r/, https://github.com/hayamizu-lab/treefit-r/

NeedsCompilation: no

Language: en-US

Materials: README, NEWS

In views: Omics

CRAN checks: treefit results

Documentation:

Reference manual: treefit.html , treefit.pdf

Vignettes: Treefit - Getting started (source, R code)
Treefit - Working with Seurat (source, R code)

Downloads:

Package source: treefit_1.0.3.tar.gz

Windows binaries: r-devel: treefit_1.0.3.zip, r-release: treefit_1.0.3.zip, r-oldrel: treefit_1.0.3.zip

macOS binaries: r-release (arm64): treefit_1.0.3.tgz, r-oldrel (arm64): treefit_1.0.3.tgz, r-release (x86_64): treefit_1.0.3.tgz, r-oldrel (x86_64): treefit_1.0.3.tgz

Old sources: treefit archive

Linking:

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