📦 lbaModel

CRAN Status Downloads License: GPL-3 R-CMD-check

🧠 Overview

lbaModel provides fast and flexible tools for working with the Linear Ballistic Accumulator (LBA) model, a widely used framework in cognitive psychology and neuroscience for simulating and analysing choice and response time (RT) data.

Key features:

• ⚡ Likelihood computation for parameter estimation
• 🎯 Data simulation at the subject or population level
• 📊 Probability density (PDF) & cumulative distribution (CDF) evaluation
• 🔗 Design-based parameter mapping for factorial experiments
• 💻 C++ backend for high-performance computation

While designed to be part of the ggdmc ecosystem, lbaModel is also fully functional as a standalone package.

📐 Conceptual Illustration

Here’s a schematic of the LBA model showing accumulators racing to threshold (similar to diffusion models, but with linear deterministic growth.)

Figure: The LBA model assumes evidence accumulates linearly and independently across choices, with start points, drawing from a uniform distribution and drift rates. The first accumulator to hit its threshold determines the response and response time.

🚀 Getting Started

Example: Minimal LBA Model

 library(ggdmcModel)
 library(ggdmcPrior)
 
model <- BuildModel(
 p_map = list(A = "1", B = "1", t0 = "1", mean_v = "M", sd_v = "1", st0 = "1"),
 match_map = list(M = list(s1 = "r1", s2 = "r2")),
 factors = list(S = c("s1", "s2")),
 constants = c(st0 = 0, sd_v = 1),
 accumulators = c("r1", "r2"),
 type = "lba"
)
 
 # Set population-level prior
pop_mean <- c(A = 0.4, B = 0.5, mean_v.false = 0.15, mean_v.true = 2.5, t0 = 0.3)
pop_scale <- c(A = 0.1, B = 0.1, mean_v.false = 0.2, mean_v.true = 0.2, t0 = 0.05)
 
pop_dist <- BuildPrior(
 p0 = pop_mean,
 p1 = pop_scale,
 lower = c(0, 0, 0, 0, 0),
 upper = rep(NA, length(pop_mean)),
 dists = rep("tnorm", length(pop_mean)),
 log_p = rep(FALSE, length(pop_mean))
)
 
 plot_prior(pop_dist)

Simulating Data

sub_model <- setLBA(model)
pop_model <- setLBA(model, population_distribution = pop_dist)
 
 # One subject
p_vector <- c(A = 0.75, B = 1.25, mean_v.false = 1.5, mean_v.true = 2.5, t0 = 0.15)
dat <- simulate(sub_model, nsim = 256, parameter_vector = p_vector, n_subject = 1)
 
 # Multiple subjects
hdat <- simulate(pop_model, nsim = 128, n_subject = 32)

📊 Visualising LBA Densities

 # Parameters
params_tmp <- list(
 A = c(0.5, 0.5),
 b = c(1.0, 1.0),
 mean_v = c(2.0, 1.0),
 sd_v = c(1.0, 1.0),
 st0 = c(0.0, 0.0),
 t0 = c(0.2, 0.2)
)
 
 # Convert to matrix
param_list2mat <- function(param_list) {
 n_row <- length(param_list[[1]])
 n_col <- length(param_list)
 out <- matrix(NA, nrow = n_row, ncol = n_col)
 for (i in seq_len(n_col)) out[, i] <- param_list[[i]]
 t(out)
}
 
params <- param_list2mat(params_tmp)
time_params <- c(0, 5, 0.01)
nv <- ncol(params)
is_pos <- rep(TRUE, nv)
 
pdfs <- theoretical_dlba(params, is_pos, time_params)
cdfs <- theoretical_plba(params, is_pos, time_params)

📦 Installation

From CRAN (Recommended)

 install.packages("lbaModel")

From GitHub (Development Version)

⚠️ Requires development tools and extra dependencies.

 # install.packages("devtools")
devtools::install_github("yxlin/lbaModel")

🔧 Dependencies

• R (≥ 3.3.0)
• ggdmcPrior
• ggdmcModel
• Rcpp (≥ 1.0.7)
• RcppArmadillo (≥ 0.10.7.5.0)
• ggdmcHeaders

📚 Reference

If you use lbaModel, please cite:

• Brown & Heathcote (2008). The simplest complete model of choice response time: Linear ballistic accumulation. Cognitive Psychology, 57(3), 153–178.: https://doi.org/10.1016/j.cogpsych.200712002
• Lin & Strickland (2020). Evidence accumulation models with R: A practical guide to hierarchical Bayesian methods. The Quantitative Methods for Psychology, 16(2), 133–149. https://doi.org/10.20982/tqmp.16.2.p133

🔄 Related R Packages

• glba: Generalised LBA model fitting via MLE
• rtdists: Density/distribution for LBA and diffusion models.

Why lbaModel?

• Tight integration with ggdmc for hierarchical Bayesian inference
• Full support for design-based parameter mapping in factorial designs
• Optimised C++ backend with extensions (ggdmcLikelihood, pPDA) for high-performance parallelised LBA

🤝 Contributing

Contributions are welcome! Please feel free to submit issues, fork the repo, or open pull requests.

📬 Contact

• Maintainer: Yi-Shin Lin
• 📧 yishinlin001@gmail.com