MetaNet: Network Analysis for Omics Data
Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.
Version:
0.2.7
Depends:
R (≥ 4.1.0),
igraph (≥ 1.3.5)
Imports:
graphics,
dplyr,
ggplot2 (≥ 3.2.0),
ggnewscale,
ggrepel, grDevices,
magrittr,
reshape2, stats,
tibble, utils,
pcutils (≥ 0.2.7),
rlang
Suggests:
pheatmap,
vegan,
stringr,
foreach,
doSNOW,
snow,
knitr,
rmarkdown,
prettydoc,
Hmisc,
gifski,
ggraph,
networkD3,
ggpmisc,
ggtree,
treeio,
circlize,
jsonify,
ggpubr,
corrplot,
philentropy,
spatstat.random,
spatstat.geom,
sf
Published:
2025年06月26日
Maintainer:
Chen Peng <pengchen2001 at zju.edu.cn>
NeedsCompilation:
no
Documentation:
Downloads:
Reverse dependencies:
Linking:
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