ACNE: Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

Version: 0.9.2
Depends: R (≥ 3.0.0), aroma.affymetrix (≥ 2.14.0)
Imports: MASS, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.23.0), R.utils (≥ 2.1.0), matrixStats (≥ 0.50.0), R.filesets (≥ 2.9.0), aroma.core (≥ 2.14.0)
Suggests: DNAcopy
Published: 2025年08月19日
DOI: 10.32614/CRAN.package.ACNE
Author: Maria Ortiz [aut], Henrik Bengtsson [aut, cre, cph], Angel Rubio [aut]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
BugReports: https://github.com/HenrikBengtsson/ACNE/issues
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
URL: https://github.com/HenrikBengtsson/ACNE
NeedsCompilation: no
Citation: ACNE citation info
Materials: README, NEWS
In views: Omics
CRAN checks: ACNE results

Documentation:

Reference manual: ACNE.html , ACNE.pdf

Downloads:

Package source: ACNE_0.9.2.tar.gz
Windows binaries: r-devel: ACNE_0.9.2.zip, r-release: ACNE_0.9.2.zip, r-oldrel: ACNE_0.9.2.zip
macOS binaries: r-release (arm64): ACNE_0.9.2.tgz, r-oldrel (arm64): ACNE_0.9.2.tgz, r-release (x86_64): ACNE_0.9.2.tgz, r-oldrel (x86_64): ACNE_0.9.2.tgz
Old sources: ACNE archive

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