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"make regen-frozen" changes PCbuild/_freeze_module.vcxproj and PCbuild/_freeze_module.vcxproj.filters changes files end of line on Linux. I'm working on a fix.
When Python is built out of the source free, "make regen-pegen" changes Parser/parser.c and Tools/peg_generator/pegen/grammar_parser.py:
diff --git a/Parser/parser.c b/Parser/parser.c
index 3cea370c5a..caf864d86c 100644
--- a/Parser/parser.c
+++ b/Parser/parser.c
@@ -1,4 +1,4 @@
-// @generated by pegen from ./Grammar/python.gram
+// @generated by pegen from ../Grammar/python.gram
 #include "pegen.h"
 
 #if defined(Py_DEBUG) && defined(Py_BUILD_CORE)
diff --git a/Tools/peg_generator/pegen/grammar_parser.py b/Tools/peg_generator/pegen/grammar_parser.py
index 6e9f7d3d11..6e9885cef7 100644
--- a/Tools/peg_generator/pegen/grammar_parser.py
+++ b/Tools/peg_generator/pegen/grammar_parser.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python3.8
-# @generated by pegen from ./Tools/peg_generator/pegen/metagrammar.gram
+# @generated by pegen from ../Tools/peg_generator/pegen/metagrammar.gram
 
 import ast
 import sys