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Judging from Éric's reaction on Github, I suspect there may be some reticence to changing this code.
I've sub-classed the check command in the project I'm working on to demonstrate what I would like the new behavior to be.
https://github.com/jambonsw/django-improved-user/blob/4b699814f68cefe6cf7a63f43f619ee21376cb01/setup.py#L34
If that looks interesting and people are open to changes along those lines, I'm happy to discuss, take feedback, and open a PR. Alternatively, I'm happy to see about overriding the check command in pypa/setuptools instead of modifying distutils. If neither of these are of interest, feel free to close this issue.