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Thank you for the provided test case but because it depends upon compiled code (the libsvm.so.2 file you supplied) it:
(1) makes me wonder if the issue might not arise from an issue inside the supplied library (perhaps it was not rebuilt properly on your Ubuntu 11.04 system after migrating to it from OpenSUSE 11.4 -- the timestamp on the libsvm.so.2 file appears to support this suspicion);
(2) does not give us a reasonably concise test case to be able to debug and begin to try to understand.
Would it be possible to supply a simpler demonstration of the issue that perhaps only involves Python code?
I realize this issue is quite stale now and that you (Michael) have already reported discovering a workaround.