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Dropping the implicit invalidation altogether works for me. I was hoping to find a better solution because for the majority of use cases I personally care about the existing behavior is preferable.
That said I have to support OSX users as possibly the majority of my userbase, and I think that for anyone it's a big enough exception that it can't be ignored.
That being the case, explicit is better than implicit here. I didn't have too much trouble finding importlib.invalidate_caches() once I realized what the problem was, but the fact that this change needs to be made could be better advertised I suppose.
Thanks.