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What you're seeing here is just one of may things that go subtly wrong when you reload a class. I don't think we should fix this one aspect while leaving so many other bugs due to the same root cause.
It would be better to focus your energy on a way to improve reloading, e.g. make it so that the identity of global functions and classes doesn't change when their module is reloaded. (You'll find it a tough problem, but note that it's been solved for at least one specific instance: modules *do* retain their identity, so maybe you can use that as a model.)