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I tried the following:
setup(
 data_files = [(sys.prefix_exec, os.path.join('Win32', 'BeaEngine.dll'))]
 # (... rest of the setup call here...)
)
This works perfectly when running the "python setup.py install". But when generating an installer (not MSI but the exe file), the installer places the 'BeaEngine.dll' in a subdirectory called 'python27'. For 64 bit builds, the subdirectory is called 'Python27-x64' instead.
The paths to my python installations are "C:\Python27" and "C:\Python27-x64" respectively. The target folders should have been those, not "C:\Python27-x64\Python27-x64" which is clearly wrong.
So far my workaround was this:
 data_files = [(os.path.join(sys.prefix_exec,'..'), os.path.join('Win32', 'BeaEngine.dll'))]
But of course, now my setup.py script only works for generating the installer, not for installing the module from sources.

Mario: would you like to work on a patch?

Distutils is now deprecated (see PEP 632) and all tagged issues are being closed. From now until removal, only release blocking issues will be considered for distutils.
If this issue does not relate to distutils, please remove the component and reopen it. If you believe it still requires a fix, most likely the issue should be re-reported at https://github.com/pypa/setuptools