CENTREannotation

This is the released version of CENTREannotation; for the devel version, see CENTREannotation.

Hub package for the annotation data of CENTRE (GENCODE v40 and SCREEN v3)

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Bioconductor version: Release (3.22)

This is an AnnotationHub package for the CENTRE Bioconductor software package. It contains the GENCODE version 40 annotation and ENCODE Registry of candidate cis-regulatory elements (cCREs) version 3. All for Human hg38 genome.

Author: Sara Lopez Ruiz de Vargas [aut, cre] ORCID iD ORCID: 0000-0002-1290-4774

Maintainer: Sara Lopez Ruiz de Vargas <lopez_s at molgen.mpg.de>

Citation (from within R, enter citation("CENTREannotation")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CENTREannotation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CENTREannotation")

CENTRE AnnotationHub datasets HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, AnnotationHub

Version 0.99.1

License Artistic-2.0

Depends R (>= 4.5.0)

Imports AnnotationHub, RSQLite, DBI, BiocGenerics, methods

System Requirements

URL https://github.com/slrvv/CENTREannotation

Bug Reports https://github.com/slrvv/CENTREannotation/issues

Suggests knitr, rmarkdown, testthat, BiocStyle

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CENTREannotation_0.99.1.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Package Short Url https://bioconductor.org/packages/CENTREannotation/

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