BioMartGOGeneSets

This is the released version of BioMartGOGeneSets; for the devel version, see BioMartGOGeneSets.

Gene Ontology Gene Sets from BioMart

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Bioconductor version: Release (3.22)

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

Author: Zuguang Gu [aut, cre] ORCID iD ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("BioMartGOGeneSets")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BioMartGOGeneSets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMartGOGeneSets")

BioMart Gene Ontology Gene Sets Collections HTML R Script

Pre-compiled GO Gene Sets HTML R Script

Retrieve GO Gene Sets from BioMart HTML R Script

Versions HTML

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, Organism

Version 0.99.11

License MIT + file LICENSE

Depends R (>= 4.0.0)

Imports utils, S4Vectors, GenomicRanges

System Requirements

URL https://github.com/jokergoo/BioMartGOGeneSets

Suggests biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioMartGOGeneSets_0.99.11.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Package Short Url https://bioconductor.org/packages/BioMartGOGeneSets/

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