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scanMiR
This is the released version of scanMiR; for the devel version, see scanMiR.
scanMiR
Bioconductor version: Release (3.22)
A set of tools for working with miRNA affinity models (KdModels), efficiently scanning for miRNA binding sites, and predicting target repression. It supports scanning using miRNA seeds, full miRNA sequences (enabling 3' alignment) and KdModels, and includes the prediction of slicing and TDMD sites. Finally, it includes utility and plotting functions (e.g. for the visual representation of miRNA-target alignment).
Author: Pierre-Luc Germain [cre, aut] ORCID iD ORCID: 0000-0003-3418-4218 , Michael Soutschek [aut], Fridolin Gross [aut]
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
citation("scanMiR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scanMiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scanMiR")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.