sangerseqR

This is the released version of sangerseqR; for the devel version, see sangerseqR.

Tools for Sanger Sequencing Data in R

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DOI: 10.18129/B9.bioc.sangerseqR

Bioconductor version: Release (3.22)

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("sangerseqR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("sangerseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sangerseqR")

Using the sangerseqR package HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews SNP, Sequencing, Software, Visualization

Version 1.46.0

In Bioconductor since BioC 2.14 (R-3.1) (11.5 years)

License GPL-2

Depends R (>= 3.5.0), Biostrings, pwalign, stringr

Imports methods, shiny

System Requirements

URL

Suggests BiocStyle, knitr, RUnit, BiocGenerics

Linking To

Enhances

Depends On Me sangeranalyseR

Imports Me scifer

Suggests Me CrispRVariants

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sangerseqR_1.46.0.tar.gz

Windows Binary (x86_64) sangerseqR_1.46.0.zip

macOS Binary (x86_64) sangerseqR_1.46.0.tgz

macOS Binary (arm64) sangerseqR_1.46.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/sangerseqR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sangerseqR

Bioc Package Browser https://code.bioconductor.org/browse/sangerseqR/

Package Short Url https://bioconductor.org/packages/sangerseqR/

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