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rifiComparative
This is the released version of rifiComparative; for the devel version, see rifiComparative.
'rifiComparative' compares the output of rifi from two different conditions.
Bioconductor version: Release (3.22)
'rifiComparative' is a continuation of rifi package. It compares two conditions output of rifi using half-life and mRNA at time 0 segments. As an input for the segmentation, the difference between half-life of both condtions and log2FC of the mRNA at time 0 are used. The package provides segmentation, statistics, summary table, fragments visualization and some additional useful plots for further anaylsis.
Author: Loubna Youssar [aut, cre], Jens cre Georg [aut]
Maintainer: Loubna Youssar <lyoussar at gmail.com>
citation("rifiComparative")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rifiComparative")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rifiComparative")
Details
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Follow Installation instructions to use this package in your R session.