pvac

This is the released version of pvac; for the devel version, see pvac.

PCA-based gene filtering for Affymetrix arrays

Bioconductor version: Release (3.22)

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

Author: Jun Lu and Pierre R. Bushel

Maintainer: Jun Lu <jlu276 at gmail.com>, Pierre R. Bushel <bushel at niehs.nih.gov>

Citation (from within R, enter citation("pvac")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("pvac")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pvac")

PCA-based gene filtering for Affymetrix GeneChips PDF R Script

Reference Manual PDF

Version 1.58.0

In Bioconductor since BioC 2.8 (R-2.13) (14.5 years)

License LGPL (>= 2.0)

Depends R (>= 2.8.0)

Imports affy(>= 1.20.0), stats, Biobase

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Follow Installation instructions to use this package in your R session.

Source Package pvac_1.58.0.tar.gz

Windows Binary (x86_64) pvac_1.58.0.zip (64-bit only)

macOS Binary (x86_64) pvac_1.58.0.tgz

macOS Binary (arm64) pvac_1.58.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/pvac

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pvac

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