hypeR

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.22 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see hypeR.

An R Package For Geneset Enrichment Workflows

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DOI: 10.18129/B9.bioc.hypeR

Bioconductor version: Release (3.22)

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut], Andrew Chen [aut, cre], Stefano Monti [aut]

Maintainer: Andrew Chen <andrewdr at bu.edu>

Citation (from within R, enter citation("hypeR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

hypeR HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software

Version 2.8.1

In Bioconductor since BioC 3.9 (R-3.6) (6.5 years)

License GPL-3 + file LICENSE

Depends R (>= 3.6.0)

Imports ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny, BiocStyle

System Requirements

URL https://github.com/montilab/hypeR

Bug Reports https://github.com/montilab/hypeR/issues

Suggests tidyverse, devtools, testthat, knitr

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hypeR_2.8.1.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) hypeR_2.8.1.tgz

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/hypeR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hypeR

Package Short Url https://bioconductor.org/packages/hypeR/

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