gypsum

This is the released version of gypsum; for the devel version, see gypsum.

Interface to the gypsum REST API

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DOI: 10.18129/B9.bioc.gypsum

Bioconductor version: Release (3.22)

Client for the gypsum REST API (https://gypsum.artifactdb.com), a cloud-based file store in the ArtifactDB ecosystem. This package provides functions for uploads, downloads, and various adminstrative and management tasks. Check out the documentation at https://github.com/ArtifactDB/gypsum-worker for more details.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("gypsum")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("gypsum")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gypsum")

Hitting the gypsum API HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Software

Version 1.6.0

In Bioconductor since BioC 3.19 (R-4.4) (1.5 years)

License MIT + file LICENSE

Depends

Imports utils, httr2, jsonlite, parallel, filelock, rappdirs

System Requirements

URL https://github.com/ArtifactDB/gypsum-R

Bug Reports https://github.com/ArtifactDB/gypsum-R/issues

Suggests knitr, rmarkdown, testthat, BiocStyle, digest, jsonvalidate, DBI, RSQLite, S4Vectors, methods

Linking To

Enhances

Depends On Me

Imports Me celldex, scRNAseq

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gypsum_1.6.0.tar.gz

Windows Binary (x86_64) gypsum_1.6.0.zip

macOS Binary (x86_64) gypsum_1.6.0.tgz

macOS Binary (arm64) gypsum_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/gypsum

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gypsum

Bioc Package Browser https://code.bioconductor.org/browse/gypsum/

Package Short Url https://bioconductor.org/packages/gypsum/

Package Downloads Report Download Stats