ggtreeDendro

This is the released version of ggtreeDendro; for the devel version, see ggtreeDendro.

Drawing 'dendrogram' using 'ggtree'

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DOI: 10.18129/B9.bioc.ggtreeDendro

Bioconductor version: Release (3.22)

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

Author: Guangchuang Yu [aut, cre, cph] ORCID iD ORCID: 0000-0002-6485-8781 , Shuangbin Xu [ctb] ORCID iD ORCID: 0000-0003-3513-5362 , Chuanjie Zhang [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtreeDendro")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ggtreeDendro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeDendro")

Visualizing Dendrogram using ggtree HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization

Version 1.12.0

In Bioconductor since BioC 3.16 (R-4.2) (3 years)

License Artistic-2.0

Depends ggtree(>= 3.5.3)

Imports ggplot2, stats, tidytree, utils

System Requirements

URL

Suggests aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggtreeDendro_1.12.0.tar.gz

Windows Binary (x86_64) ggtreeDendro_1.12.0.zip

macOS Binary (x86_64) ggtreeDendro_1.12.0.tgz

macOS Binary (arm64) ggtreeDendro_1.12.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ggtreeDendro

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggtreeDendro

Bioc Package Browser https://code.bioconductor.org/browse/ggtreeDendro/

Package Short Url https://bioconductor.org/packages/ggtreeDendro/

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Old Source Packages for BioC 3.22 Source Archive