ggseqalign

This is the released version of ggseqalign; for the devel version, see ggseqalign.

Minimal Visualization of Sequence Alignments

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DOI: 10.18129/B9.bioc.ggseqalign

Bioconductor version: Release (3.22)

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Author: Simeon Lim Rossmann [aut, cre] ORCID iD ORCID: 0000-0003-0435-8221

Maintainer: Simeon Lim Rossmann <simeon.rossmann at nmbu.no>

Citation (from within R, enter citation("ggseqalign")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ggseqalign")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggseqalign")

Quickstart Guide to ggseqalign HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Alignment, MultipleSequenceAlignment, Software, Visualization

Version 1.4.0

In Bioconductor since BioC 3.20 (R-4.4) (1 year)

License Artistic-2.0

Depends R (>= 4.4.0)

Imports pwalign, dplyr, ggplot2

System Requirements

URL https://github.com/simeross/ggseqalign

Bug Reports https://github.com/simeross/ggseqalign/issues

Suggests Biostrings, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggseqalign_1.4.0.tar.gz

Windows Binary (x86_64) ggseqalign_1.4.0.zip

macOS Binary (x86_64) ggseqalign_1.4.0.tgz

macOS Binary (arm64) ggseqalign_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ggseqalign

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggseqalign

Bioc Package Browser https://code.bioconductor.org/browse/ggseqalign/

Package Short Url https://bioconductor.org/packages/ggseqalign/

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