derfinderHelper

This is the released version of derfinderHelper; for the devel version, see derfinderHelper.

derfinder helper package

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DOI: 10.18129/B9.bioc.derfinderHelper

Bioconductor version: Release (3.22)

Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.

Author: Leonardo Collado-Torres [aut, cre] ORCID iD ORCID: 0000-0003-2140-308X , Andrew E. Jaffe [aut] ORCID iD ORCID: 0000-0001-6886-1454 , Jeffrey T. Leek [aut, ths] ORCID iD ORCID: 0000-0002-2873-2671

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("derfinderHelper")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("derfinderHelper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderHelper")

Introduction to derfinderHelper HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software

Version 1.44.0

In Bioconductor since BioC 3.0 (R-3.1) (11 years)

License Artistic-2.0

Depends R (>= 3.2.2)

Imports IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2)

System Requirements

URL https://github.com/leekgroup/derfinderHelper

Bug Reports https://support.bioconductor.org/t/derfinderHelper

Suggests sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr

Linking To

Enhances

Depends On Me

Imports Me derfinder

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package derfinderHelper_1.44.0.tar.gz

Windows Binary (x86_64) derfinderHelper_1.44.0.zip

macOS Binary (x86_64) derfinderHelper_1.44.0.tgz

macOS Binary (arm64) derfinderHelper_1.44.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/derfinderHelper

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/derfinderHelper

Bioc Package Browser https://code.bioconductor.org/browse/derfinderHelper/

Package Short Url https://bioconductor.org/packages/derfinderHelper/

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