casper
This is the released version of casper; for the devel version, see casper.
Characterization of Alternative Splicing based on Paired-End Reads
Bioconductor version: Release (3.22)
Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.
Author: David Rossell, Camille Stephan-Otto, Manuel Kroiss, Miranda Stobbe, Victor Pena
Maintainer: David Rossell <rosselldavid at gmail.com>
citation("casper")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("casper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("casper")
Details
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Follow Installation instructions to use this package in your R session.