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bugsigdbr
This is the released version of bugsigdbr; for the devel version, see bugsigdbr.
R-side access to published microbial signatures from BugSigDB
Bioconductor version: Release (3.22)
The bugsigdbr package implements convenient access to bugsigdb.org from within R/Bioconductor. The goal of the package is to facilitate import of BugSigDB data into R/Bioconductor, provide utilities for extracting microbe signatures, and enable export of the extracted signatures to plain text files in standard file formats such as GMT.
Author: Ludwig Geistlinger [aut, cre], Jennifer Wokaty [aut], Levi Waldron [aut]
Maintainer: Ludwig Geistlinger <ludwig.geistlinger at gmail.com>
citation("bugsigdbr")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bugsigdbr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bugsigdbr")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.