UniProt.ws

This is the released version of UniProt.ws; for the devel version, see UniProt.ws.

R Interface to UniProt Web Services

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DOI: 10.18129/B9.bioc.UniProt.ws

Bioconductor version: Release (3.22)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("UniProt.ws")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")

UniProt.ws: A package for retrieving data from the UniProt web service HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, BioCarta, GO, Infrastructure, KEGG, Software

Version 2.50.0

In Bioconductor since BioC 2.12 (R-3.0) (12.5 years)

License Artistic-2.0

Depends R (>= 4.5.0)

Imports AnnotationDbi, BiocFileCache, BiocBaseUtils, BiocGenerics, httr2, jsonlite, methods, progress, rjsoncons, rlang, utils

System Requirements

URL https://github.com/Bioconductor/UniProt.ws

Bug Reports https://github.com/Bioconductor/UniProt.ws/issues

Suggests BiocStyle, knitr, rmarkdown, tinytest

Linking To

Enhances

Depends On Me

Imports Me dagLogo, drugTargetInteractions, ginmappeR, immunogenViewer

Suggests Me autonomics, cleaver, qPLEXanalyzer

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UniProt.ws_2.50.0.tar.gz

Windows Binary (x86_64) UniProt.ws_2.50.0.zip

macOS Binary (x86_64) UniProt.ws_2.50.0.tgz

macOS Binary (arm64) UniProt.ws_2.50.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/UniProt.ws

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UniProt.ws

Bioc Package Browser https://code.bioconductor.org/browse/UniProt.ws/

Package Short Url https://bioconductor.org/packages/UniProt.ws/

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