TransView

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.22 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TransView.

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.TransView

Bioconductor version: Release (3.22)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization

Version 1.53.1

In Bioconductor since BioC 2.11 (R-2.15) (13 years)

License GPL-3

Depends methods, GenomicRanges

Imports BiocGenerics, S4Vectors(>= 0.9.25), IRanges, gplots

System Requirements GNU make

URL http://bioconductor.org/packages/release/bioc/html/TransView.html

Suggests RUnit, pasillaBamSubset, BiocManager

Linking To Rhtslib(>= 1.99.1)

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package

Windows Binary (x86_64) TransView_1.53.1.zip

macOS Binary (x86_64) TransView_1.54.0.tgz

macOS Binary (arm64) TransView_1.54.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/TransView

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TransView

Package Short Url https://bioconductor.org/packages/TransView/

Package Downloads Report Download Stats