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SpaceMarkers
This is the released version of SpaceMarkers; for the devel version, see SpaceMarkers.
Spatial Interaction Markers
Bioconductor version: Release (3.22)
Spatial transcriptomic technologies have helped to resolve the connection between gene expression and the 2D orientation of tissues relative to each other. However, the limited single-cell resolution makes it difficult to highlight the most important molecular interactions in these tissues. SpaceMarkers, R/Bioconductor software, can help to find molecular interactions, by identifying genes associated with latent space interactions in spatial transcriptomics.
Author: Atul Deshpande [aut, cre] ORCID iD ORCID: 0000-0001-5144-6924 , Ludmila Danilova [ctb], Dmitrijs Lvovs [ctb] ORCID iD ORCID: 0009-0003-2152-6853
Maintainer: Atul Deshpande <adeshpande at jhu.edu>
citation("SpaceMarkers")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SpaceMarkers")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SpaceMarkers")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.