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RegionalST
This is the released version of RegionalST; for the devel version, see RegionalST.
Investigating regions of interest and performing regional cell type-specific analysis with spatial transcriptomics data
Bioconductor version: Release (3.22)
This package analyze spatial transcriptomics data through cross-regional cell type-specific analysis. It selects regions of interest (ROIs) and identifys cross-regional cell type-specific differential signals. The ROIs can be selected using automatic algorithm or through manual selection. It facilitates manual selection of ROIs using a shiny application.
Author: Ziyi Li [aut, cre]
Maintainer: Ziyi Li <zli16 at mdanderson.org>
citation("RegionalST")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RegionalST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RegionalST")
Details
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Follow Installation instructions to use this package in your R session.