PADOG
This is the released version of PADOG; for the devel version, see PADOG.
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Bioconductor version: Release (3.22)
This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.
Author: Adi Laurentiu Tarca <atarca at med.wayne.edu>; Zhonghui Xu <zhonghui.xu at gmail.com>
Maintainer: Adi L. Tarca <atarca at med.wayne.edu>
citation("PADOG")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PADOG")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PADOG")
Details
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Follow Installation instructions to use this package in your R session.