MouseFM

This is the released version of MouseFM; for the devel version, see MouseFM.

In-silico methods for genetic finemapping in inbred mice

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DOI: 10.18129/B9.bioc.MouseFM

Bioconductor version: Release (3.22)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz [aut, cre] ORCID iD ORCID: 0000-0002-4728-3357 , Inken Wohlers [aut] ORCID iD ORCID: 0000-0003-4004-0464 , Hauke Busch [aut] ORCID iD ORCID: 0000-0003-4763-4521

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Citation (from within R, enter citation("MouseFM")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseFM")

Fetch HTML R Script

Finemapping HTML R Script

Prioritization HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation

Version 1.20.0

In Bioconductor since BioC 3.12 (R-4.0) (5 years)

License GPL-3

Depends R (>= 4.0.0)

Imports httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, Seqinfo, methods, biomaRt, stats, IRanges

System Requirements

URL

Bug Reports https://github.com/matmu/MouseFM/issues

Suggests BiocStyle, testthat, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseFM_1.20.0.tar.gz

Windows Binary (x86_64) MouseFM_1.20.0.zip

macOS Binary (x86_64) MouseFM_1.20.0.tgz

macOS Binary (arm64) MouseFM_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MouseFM

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseFM

Bioc Package Browser https://code.bioconductor.org/browse/MouseFM/

Package Short Url https://bioconductor.org/packages/MouseFM/

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