ChIPsim

This is the released version of ChIPsim; for the devel version, see ChIPsim.

Simulation of ChIP-seq experiments

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DOI: 10.18129/B9.bioc.ChIPsim

Bioconductor version: Release (3.22)

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at gmail.com>

Citation (from within R, enter citation("ChIPsim")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ChIPsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPsim")

Simulating ChIP-seq experiments PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ChIPSeq, Infrastructure, Software

Version 1.64.0

In Bioconductor since BioC 2.5 (R-2.10) (16 years)

License GPL (>= 2)

Depends Biostrings(>= 2.29.2)

Imports IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils

System Requirements

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPsim_1.64.0.tar.gz

Windows Binary (x86_64) ChIPsim_1.64.0.zip

macOS Binary (x86_64) ChIPsim_1.64.0.tgz

macOS Binary (arm64) ChIPsim_1.64.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ChIPsim

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPsim

Bioc Package Browser https://code.bioconductor.org/browse/ChIPsim/

Package Short Url https://bioconductor.org/packages/ChIPsim/

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