BioTIP

This is the released version of BioTIP; for the devel version, see BioTIP.

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: Release (3.22)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Felix Yu <felixy at uchicago.edu> and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioTIP")

BioTIP- an R package for characterization of Biological Tipping-Point HTML R Script

Reference Manual PDF

Version 1.24.0

In Bioconductor since BioC 3.10 (R-3.6) (6 years)

License GPL-2

Depends R (>= 3.6)

Imports igraph, cluster, psych, stringr, GenomicRanges, MASS, scran, methods, stats, utils, grDevices, graphics, foreach, doParallel

System Requirements

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package BioTIP_1.24.0.tar.gz

Windows Binary (x86_64) BioTIP_1.24.0.zip

macOS Binary (x86_64) BioTIP_1.24.0.tgz

macOS Binary (arm64) BioTIP_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BioTIP

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioTIP

Package Downloads Report Download Stats