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rawrr

This is the released version of rawrr; for the devel version, see rawrr.

Direct Access to Orbitrap Data and Beyond


Bioconductor version: Release (3.22)

This package wraps the functionality of the Thermo Fisher Scientic RawFileReader .NET 8.0 assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

Author: Christian Panse [aut, cre] ORCID iD ORCID: 0000-0003-1975-3064 , Leonardo Schwarz [ctb] ORCID iD ORCID: 0009-0003-1828-6924 , Tobias Kockmann [aut] ORCID iD ORCID: 0000-0002-1847-885X

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawrr")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")
Direct Access to Orbitrap Data and Beyond HTML R Script
Reference Manual PDF
NEWS Text
INSTALL Text

Details

Version 1.18.0
In Bioconductor since BioC 3.13 (R-4.1) (4.5 years)
License GPL-3
Depends R (>= 4.5)
Imports grDevices, graphics, stats, utils
System Requirements .NET 8.0 (optional; required only if you want to compile and link the C# code)
See More
Suggests BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
Linking To
Enhances
Depends On Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rawrr_1.18.0.tar.gz
Windows Binary (x86_64) rawrr_1.17.13.zip
macOS Binary (x86_64) rawrr_1.18.0.tgz
macOS Binary (arm64) rawrr_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rawrr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rawrr
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