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mosaicsExample
This is the released version of mosaicsExample; for the devel version, see mosaicsExample.
Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification
Bioconductor version: Release (3.22)
Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.
Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
citation("mosaicsExample")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mosaicsExample")
For older versions of R, please refer to the appropriate Bioconductor release.
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Follow Installation instructions to use this package in your R session.