gDR

This is the released version of gDR; for the devel version, see gDR.

Umbrella package for R packages in the gDR suite

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DOI: 10.18129/B9.bioc.gDR

Bioconductor version: Release (3.22)

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Author: Allison Vuong [aut], Bartosz Czech [aut] ORCID iD ORCID: 0000-0002-9908-3007 , Arkadiusz Gladki [cre, aut] ORCID iD ORCID: 0000-0002-7059-6378 , Marc Hafner [aut] ORCID iD ORCID: 0000-0003-1337-7598 , Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("gDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDR")

Running the drug response processing pipeline HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, ShinyApps, Software

Version 1.8.0

In Bioconductor since BioC 3.18 (R-4.3) (2 years)

License Artistic-2.0

Depends R (>= 4.2), gDRcore(>= 1.7.1), gDRimport(>= 1.7.1), gDRutils(>= 1.7.1)

Imports

System Requirements

URL https://github.com/gdrplatform/gDR https://gdrplatform.github.io/gDR/

Bug Reports https://github.com/gdrplatform/gDR/issues

Suggests BiocStyle, BumpyMatrix, futile.logger, gDRstyle(>= 1.7.1), gDRtestData(>= 1.7.1), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gDR_1.8.0.tar.gz

Windows Binary (x86_64) gDR_1.8.0.zip

macOS Binary (x86_64) gDR_1.8.0.tgz

macOS Binary (arm64) gDR_1.8.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/gDR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gDR

Bioc Package Browser https://code.bioconductor.org/browse/gDR/

Package Short Url https://bioconductor.org/packages/gDR/

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