curatedTCGAData

This is the development version of curatedTCGAData; for the stable release version, see curatedTCGAData.

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

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DOI: 10.18129/B9.bioc.curatedTCGAData

Bioconductor version: Development (3.23)

This package provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects. MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. It also links assay barcodes with patient identifiers, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire multi-'omics experiment.

Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Levi Waldron [ctb], Lucas Schiffer [ctb], Ludwig Geistlinger [ctb], Valerie Obenchain [ctb], Martin Morgan [ctb]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("curatedTCGAData")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("curatedTCGAData")

For older versions of R, please refer to the appropriate Bioconductor release.