cfToolsData

This is the development version of cfToolsData; for the stable release version, see cfToolsData.

ExperimentHub data for the cfTools package

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DOI: 10.18129/B9.bioc.cfToolsData

Bioconductor version: Development (3.23)

The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.

Author: Ran Hu [aut, cre] ORCID iD ORCID: 0000-0002-0563-8957 , Shuo Li [aut] ORCID iD ORCID: 0000-0002-1960-6016 , Xianghong Jasmine Zhou [aut] ORCID iD ORCID: 0000-0002-4522-7490 , Wenyuan Li [aut] ORCID iD ORCID: 0000-0002-5029-8525

Maintainer: Ran Hu <huran at ucla.edu>

Citation (from within R, enter citation("cfToolsData")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cfToolsData")

For older versions of R, please refer to the appropriate Bioconductor release.