bladderbatch

This is the development version of bladderbatch; for the stable release version, see bladderbatch.

Bladder gene expression data illustrating batch effects

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DOI: 10.18129/B9.bioc.bladderbatch

Bioconductor version: Development (3.23)

This package contains microarray gene expression data on 57 bladder samples from 5 batches. The data are used as an illustrative example for the sva package.

Author: Jeffrey T. Leek <jleek at jhsph.edu>

Maintainer: Jeffrey T. Leek <jleek at jhsph.edu>

Citation (from within R, enter citation("bladderbatch")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("bladderbatch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bladderbatch")

bladderbatchTutorial PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CancerData, ExperimentData, MicroarrayData

Version 1.49.0

License Artistic-2.0

Depends Biobase

Imports

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me RUVcorr

Suggests Me BatchQC, Harman, sva

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bladderbatch_1.49.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/bladderbatch

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bladderbatch

Package Short Url https://bioconductor.org/packages/bladderbatch/

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