MMDiffBamSubset

This is the development version of MMDiffBamSubset; for the stable release version, see MMDiffBamSubset.

Example ChIP-Seq data for the MMDiff package

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DOI: 10.18129/B9.bioc.MMDiffBamSubset

Bioconductor version: Development (3.23)

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Citation (from within R, enter citation("MMDiffBamSubset")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MMDiffBamSubset")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ArrayExpress, ChIPSeqData, DNASeqData, ExperimentData, Genome, Mus_musculus_Data, StemCell

Version 1.47.0

License LGPL

Depends

Imports

System Requirements

URL

Suggests MMDiff2

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me MMDiff2

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MMDiffBamSubset_1.47.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/MMDiffBamSubset

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MMDiffBamSubset

Package Short Url https://bioconductor.org/packages/MMDiffBamSubset/

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