grasp2db

This is the development version of grasp2db; for the stable release version, see grasp2db.

grasp2db, sqlite wrap of GRASP 2.0

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DOI: 10.18129/B9.bioc.grasp2db

Bioconductor version: Development (3.23)

grasp2db, sqlite wrap of NHLBI GRASP 2.0, an extended GWAS catalog.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("grasp2db")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("grasp2db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("grasp2db")

grasp2db: interface to a high density GWAS catalogue PDF R Script

Notes on Bioconductor's GRASP2 database curation HTML R Script

Reference Manual PDF

README Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData

Version 1.1.1

License Artistic-2.0 + file LICENSE

Depends RSQLite, dplyr, dbplyr

Imports methods, utils, stats, Seqinfo, GenomeInfoDb, AnnotationHub, digest

System Requirements

URL

Suggests gwascat, knitr

Linking To

Enhances AnnotationHubData

Depends On Me

Imports Me

Suggests Me AnnotationHubData

Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package grasp2db_1.1.1.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Package Short Url https://bioconductor.org/packages/grasp2db/

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